Important: This documentation covers Yarn 1 (Classic).
For Yarn 2+ docs and migration guide, see yarnpkg.com.

Package detail

sourmash

sourmash-bio64BSD-3-Clause0.19.0TypeScript support: included

tools for comparing biological sequences with k-mer sketches

minhash, bioinformatics

readme

<meta charset="utf-8"/>

sourmash

🦀 Rust API Documentation on docs.rs build-status codecov License: 3-Clause BSD

Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

This is the core library used by sourmash. It exposes a C API that can be called from FFI in other languages, and it is how we use it in Python for building the sourmash application (CLI and Python API).

sourmash is a product of the Lab for Data-Intensive Biology at the UC Davis School of Veterinary Medicine.

Support

Please ask questions and files issues on Github.

Development

Development happens on github at sourmash-bio/sourmash.

Minimum supported Rust version

Currently the minimum supported Rust version is 1.74.0.